A C D E F G I L M N O R S T

A

addCriterion(Character, String) - Method in class org.wwbota.identification.SimpleIdentification

addCriterion(Criterion) - Method in interface org.wwbota.identification.Description

Add a Character-Criterion pair

addCriterion(Criterion) - Method in class org.wwbota.identification.StandardDescription

addPossibleState(String) - Method in class org.wwbota.identification.EnumerationCharacter

C

Character - interface org.wwbota.identification.Character.

A character à la Delta.

commandLineSample - class org.wwbota.identification.commandLineSample.

commandLineSample() - Constructor for class org.wwbota.identification.commandLineSample

createFeature(Organ) - Method in interface org.wwbota.identification.GeneralProperty

Factory for a Feature having this GeneralProperty and the given Organ.

Criterion - interface org.wwbota.identification.Criterion.

A Criterion associated to a single Character, e.g.

D

Description - interface org.wwbota.identification.Description.

A Description is a list of characters with corresponding criteria.

doMain(String[]) - Method in class org.wwbota.identification.commandLineSample

E

EnumerationCharacter - class org.wwbota.identification.EnumerationCharacter.

The simplest type of a character à la Delta, a Character with String enumerated values ("multistate" in Delta), hence the name "EnumerationCharacter".

EnumerationCharacter(String) - Constructor for class org.wwbota.identification.EnumerationCharacter

F

Feature - interface org.wwbota.identification.Feature.

An extension of Character adding informations about organ (e.g. leaf blade, petal), and general property (e.g. color, shape).

G

GeneralProperty - interface org.wwbota.identification.GeneralProperty.

A General Property (e.g. color, shape).

Genus - class org.wwbota.identification.Genus.

Genus(String) - Constructor for class org.wwbota.identification.Genus

getAdvices() - Method in interface org.wwbota.identification.Identification

Which are the best characters to use now?

getAdvices() - Method in class org.wwbota.identification.SimpleIdentification

returns a list of Character, supposed the best to achieve determination.

getCharacter() - Method in interface org.wwbota.identification.Criterion

getCharacter(String) - Method in class org.wwbota.identification.SimpleTaxonomy

Helper function; it uses getCharacters().

getCharacters() - Method in class org.wwbota.identification.SimpleTaxonomy

getCharacters() - Method in interface org.wwbota.identification.Taxonomy

getChildren() - Method in interface org.wwbota.identification.Organ

Get the Organs direclly contained within this one (e.g. flower ==> sepal,petal,ovary,etamine

getCriterion(Character) - Method in interface org.wwbota.identification.Description

Accessor to Criterion from Character.

getCriterion(Character) - Method in class org.wwbota.identification.StandardDescription

Accessor to Criterion from Character.

getDescription() - Method in interface org.wwbota.identification.Identification

Get and set the list of Criteria, that is, the observed characters.

getDescription() - Method in class org.wwbota.identification.SimpleIdentification

getDescriptions() - Method in class org.wwbota.identification.SimpleTaxonomy

getDescriptions() - Method in interface org.wwbota.identification.Taxonomy

getGeneralProperty() - Method in interface org.wwbota.identification.Feature

getMap() - Method in interface org.wwbota.identification.Description

getMap() - Method in class org.wwbota.identification.StandardDescription

getMatches() - Method in interface org.wwbota.identification.Identification

Get the list of items satisfying the Criteria entered so far.

getMatches() - Method in class org.wwbota.identification.SimpleIdentification

returns a list of Description

getName() - Method in interface org.wwbota.identification.Character

getName() - Method in class org.wwbota.identification.EnumerationCharacter

getName() - Method in class org.wwbota.identification.Genus

getName() - Method in interface org.wwbota.identification.Named

getName() - Method in class org.wwbota.identification.RealNumberCharacter

getName() - Method in class org.wwbota.identification.Species

getOrgan() - Method in interface org.wwbota.identification.Feature

getParent() - Method in class org.wwbota.identification.Genus

getParent() - Method in interface org.wwbota.identification.Organ

Get the Organ containing this one (e.g. petal==> flower

getParent() - Method in class org.wwbota.identification.Species

getParent() - Method in interface org.wwbota.identification.Taxon

getPossibleValues() - Method in class org.wwbota.identification.EnumerationCharacter

getTaxon() - Method in interface org.wwbota.identification.Description

Accessor to the Taxon (item) being described

getTaxon() - Method in class org.wwbota.identification.StandardDescription

getTaxonomy() - Method in interface org.wwbota.identification.Identification

Get and set the list of Taxon (items) to be recognized, together with the characters taken in account.

getTaxonomy() - Method in class org.wwbota.identification.SimpleIdentification

getType() - Method in interface org.wwbota.identification.Character

getType() - Method in class org.wwbota.identification.EnumerationCharacter

getType() - Method in class org.wwbota.identification.RealNumberCharacter

getURI() - Method in interface org.wwbota.identification.Character

getURI() - Method in class org.wwbota.identification.EnumerationCharacter

getURI() - Method in class org.wwbota.identification.RealNumberCharacter

I

Identification - interface org.wwbota.identification.Identification.

Computer-aided interactive Identification (determination) of a biological specimen, believed to belong to one of the taxa of the current Taxonomy .

isCompatibleWith(Criterion) - Method in interface org.wwbota.identification.Criterion

isCompatibleWith(Description) - Method in interface org.wwbota.identification.Description

isCompatibleWith(Description) - Method in class org.wwbota.identification.StandardDescription

isPossibleState(Object) - Method in class org.wwbota.identification.EnumerationCharacter

L

load(String) - Method in class org.wwbota.identification.SimpleTaxonomy

NOT YET implemented ZZZZZZZZZZZZZZZZZZZZ

load(String) - Method in interface org.wwbota.identification.Taxonomy

Loads (or merge) a complete dataset from file (XDELTA or other format according to XML namespace)

M

main(String[]) - Static method in class org.wwbota.identification.commandLineSample

makeCriterion(String) - Method in interface org.wwbota.identification.Character

A factory for a Criterion (i.e. a value) of the type associated to the Character

makeCriterion(String) - Method in class org.wwbota.identification.EnumerationCharacter

A factory for a Criterion of the type associated to the Character

makeCriterion(String) - Method in class org.wwbota.identification.RealNumberCharacter

A factory for a Criterion of the type associated to the Character

N

Named - interface org.wwbota.identification.Named.

Something that has a name, possibly published by an author.

O

Organ - interface org.wwbota.identification.Organ.

Any organ (e.g. leaf blade, petal) at any level of containment

R

rankName() - Method in class org.wwbota.identification.Genus

rankName() - Method in class org.wwbota.identification.Species

rankName() - Method in interface org.wwbota.identification.Taxon

RealNumberCharacter - class org.wwbota.identification.RealNumberCharacter.

A Character with Real Number values, specified by an interval .

RealNumberCharacter(String, String) - Constructor for class org.wwbota.identification.RealNumberCharacter

S

setDescription(Description) - Method in interface org.wwbota.identification.Identification

setDescription(Description) - Method in class org.wwbota.identification.SimpleIdentification

setTaxonomy(Taxonomy) - Method in interface org.wwbota.identification.Identification

setTaxonomy(Taxonomy) - Method in class org.wwbota.identification.SimpleIdentification

SimpleIdentification - class org.wwbota.identification.SimpleIdentification.

Computer-aided interactive determination of a biological specimen, believed to belong to one of the taxa of the current Taxonomy .

SimpleIdentification(Taxonomy) - Constructor for class org.wwbota.identification.SimpleIdentification

SimpleTaxonomy - class org.wwbota.identification.SimpleTaxonomy.

A Taxonomy is an aggregation of Descriptions of Taxa and Character objects

SimpleTaxonomy() - Constructor for class org.wwbota.identification.SimpleTaxonomy

Species - class org.wwbota.identification.Species.

Species(String) - Constructor for class org.wwbota.identification.Species

StandardDescription - class org.wwbota.identification.StandardDescription.

This is a generic implementation, since it gets the information by iterating on all criteria, and calling the isCompatibleWith() function on each.

StandardDescription(Taxon) - Constructor for class org.wwbota.identification.StandardDescription

StateNotAllowedException - exception org.wwbota.identification.StateNotAllowedException.

StateNotAllowedException() - Constructor for class org.wwbota.identification.StateNotAllowedException

T

Taxon - interface org.wwbota.identification.Taxon.

A Taxon is a class in a classification.

Taxonomy - interface org.wwbota.identification.Taxonomy.

A Taxonomy is an aggregation of Descriptions of Taxa and Character objects

threshold - Variable in class org.wwbota.identification.SimpleIdentification

toString() - Method in class org.wwbota.identification.EnumerationCharacter

toString() - Method in class org.wwbota.identification.Genus

toString() - Method in class org.wwbota.identification.RealNumberCharacter

toString() - Method in class org.wwbota.identification.SimpleIdentification

toString() - Method in class org.wwbota.identification.SimpleTaxonomy

toString() - Method in class org.wwbota.identification.Species

toString() - Method in class org.wwbota.identification.StandardDescription

A C D E F G I L M N O R S T