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A
addCriterion(Character, String)
- Method in class org.wwbota.identification.
SimpleIdentification
addCriterion(Criterion)
- Method in interface org.wwbota.identification.
Description
Add a Character-Criterion pair
addCriterion(Criterion)
- Method in class org.wwbota.identification.
StandardDescription
addPossibleState(String)
- Method in class org.wwbota.identification.
EnumerationCharacter
C
Character
- interface org.wwbota.identification.
Character
.
A character à la
Delta
.
commandLineSample
- class org.wwbota.identification.
commandLineSample
.
commandLineSample()
- Constructor for class org.wwbota.identification.
commandLineSample
createFeature(Organ)
- Method in interface org.wwbota.identification.
GeneralProperty
Factory for a Feature having this GeneralProperty and the given Organ.
Criterion
- interface org.wwbota.identification.
Criterion
.
A Criterion associated to a single
Character
, e.g.
D
Description
- interface org.wwbota.identification.
Description
.
A Description is a list of characters with corresponding criteria.
doMain(String[])
- Method in class org.wwbota.identification.
commandLineSample
E
EnumerationCharacter
- class org.wwbota.identification.
EnumerationCharacter
.
The simplest type of a character à la Delta, a Character with String enumerated values ("multistate" in Delta), hence the name "EnumerationCharacter".
EnumerationCharacter(String)
- Constructor for class org.wwbota.identification.
EnumerationCharacter
F
Feature
- interface org.wwbota.identification.
Feature
.
An extension of Character adding informations about organ (e.g. leaf blade, petal), and general property (e.g. color, shape).
G
GeneralProperty
- interface org.wwbota.identification.
GeneralProperty
.
A General Property (e.g. color, shape).
Genus
- class org.wwbota.identification.
Genus
.
Genus(String)
- Constructor for class org.wwbota.identification.
Genus
getAdvices()
- Method in interface org.wwbota.identification.
Identification
Which are the best characters to use now?
getAdvices()
- Method in class org.wwbota.identification.
SimpleIdentification
returns a list of Character, supposed the best to achieve determination.
getCharacter()
- Method in interface org.wwbota.identification.
Criterion
getCharacter(String)
- Method in class org.wwbota.identification.
SimpleTaxonomy
Helper function; it uses getCharacters().
getCharacters()
- Method in class org.wwbota.identification.
SimpleTaxonomy
getCharacters()
- Method in interface org.wwbota.identification.
Taxonomy
getChildren()
- Method in interface org.wwbota.identification.
Organ
Get the Organs direclly contained within this one (e.g. flower ==> sepal,petal,ovary,etamine
getCriterion(Character)
- Method in interface org.wwbota.identification.
Description
Accessor to Criterion from Character.
getCriterion(Character)
- Method in class org.wwbota.identification.
StandardDescription
Accessor to Criterion from Character.
getDescription()
- Method in interface org.wwbota.identification.
Identification
Get and set the list of Criteria, that is, the observed characters.
getDescription()
- Method in class org.wwbota.identification.
SimpleIdentification
getDescriptions()
- Method in class org.wwbota.identification.
SimpleTaxonomy
getDescriptions()
- Method in interface org.wwbota.identification.
Taxonomy
getGeneralProperty()
- Method in interface org.wwbota.identification.
Feature
getMap()
- Method in interface org.wwbota.identification.
Description
getMap()
- Method in class org.wwbota.identification.
StandardDescription
getMatches()
- Method in interface org.wwbota.identification.
Identification
Get the list of items satisfying the Criteria entered so far.
getMatches()
- Method in class org.wwbota.identification.
SimpleIdentification
returns a list of Description
getName()
- Method in interface org.wwbota.identification.
Character
getName()
- Method in class org.wwbota.identification.
EnumerationCharacter
getName()
- Method in class org.wwbota.identification.
Genus
getName()
- Method in interface org.wwbota.identification.
Named
getName()
- Method in class org.wwbota.identification.
RealNumberCharacter
getName()
- Method in class org.wwbota.identification.
Species
getOrgan()
- Method in interface org.wwbota.identification.
Feature
getParent()
- Method in class org.wwbota.identification.
Genus
getParent()
- Method in interface org.wwbota.identification.
Organ
Get the Organ containing this one (e.g. petal==> flower
getParent()
- Method in class org.wwbota.identification.
Species
getParent()
- Method in interface org.wwbota.identification.
Taxon
getPossibleValues()
- Method in class org.wwbota.identification.
EnumerationCharacter
getTaxon()
- Method in interface org.wwbota.identification.
Description
Accessor to the Taxon (item) being described
getTaxon()
- Method in class org.wwbota.identification.
StandardDescription
getTaxonomy()
- Method in interface org.wwbota.identification.
Identification
Get and set the list of Taxon (items) to be recognized, together with the characters taken in account.
getTaxonomy()
- Method in class org.wwbota.identification.
SimpleIdentification
getType()
- Method in interface org.wwbota.identification.
Character
getType()
- Method in class org.wwbota.identification.
EnumerationCharacter
getType()
- Method in class org.wwbota.identification.
RealNumberCharacter
getURI()
- Method in interface org.wwbota.identification.
Character
getURI()
- Method in class org.wwbota.identification.
EnumerationCharacter
getURI()
- Method in class org.wwbota.identification.
RealNumberCharacter
I
Identification
- interface org.wwbota.identification.
Identification
.
Computer-aided interactive Identification (determination) of a biological specimen, believed to belong to one of the taxa of the current
Taxonomy
.
isCompatibleWith(Criterion)
- Method in interface org.wwbota.identification.
Criterion
isCompatibleWith(Description)
- Method in interface org.wwbota.identification.
Description
isCompatibleWith(Description)
- Method in class org.wwbota.identification.
StandardDescription
isPossibleState(Object)
- Method in class org.wwbota.identification.
EnumerationCharacter
L
load(String)
- Method in class org.wwbota.identification.
SimpleTaxonomy
NOT YET implemented ZZZZZZZZZZZZZZZZZZZZ
load(String)
- Method in interface org.wwbota.identification.
Taxonomy
Loads (or merge) a complete dataset from file (XDELTA or other format according to XML namespace)
M
main(String[])
- Static method in class org.wwbota.identification.
commandLineSample
makeCriterion(String)
- Method in interface org.wwbota.identification.
Character
A factory for a Criterion (i.e. a value) of the type associated to the Character
makeCriterion(String)
- Method in class org.wwbota.identification.
EnumerationCharacter
A factory for a Criterion of the type associated to the Character
makeCriterion(String)
- Method in class org.wwbota.identification.
RealNumberCharacter
A factory for a Criterion of the type associated to the Character
N
Named
- interface org.wwbota.identification.
Named
.
Something that has a name, possibly published by an author.
O
Organ
- interface org.wwbota.identification.
Organ
.
Any organ (e.g. leaf blade, petal) at any level of containment
R
rankName()
- Method in class org.wwbota.identification.
Genus
rankName()
- Method in class org.wwbota.identification.
Species
rankName()
- Method in interface org.wwbota.identification.
Taxon
RealNumberCharacter
- class org.wwbota.identification.
RealNumberCharacter
.
A Character with Real Number values, specified by an interval .
RealNumberCharacter(String, String)
- Constructor for class org.wwbota.identification.
RealNumberCharacter
S
setDescription(Description)
- Method in interface org.wwbota.identification.
Identification
setDescription(Description)
- Method in class org.wwbota.identification.
SimpleIdentification
setTaxonomy(Taxonomy)
- Method in interface org.wwbota.identification.
Identification
setTaxonomy(Taxonomy)
- Method in class org.wwbota.identification.
SimpleIdentification
SimpleIdentification
- class org.wwbota.identification.
SimpleIdentification
.
Computer-aided interactive determination of a biological specimen, believed to belong to one of the taxa of the current
Taxonomy
.
SimpleIdentification(Taxonomy)
- Constructor for class org.wwbota.identification.
SimpleIdentification
SimpleTaxonomy
- class org.wwbota.identification.
SimpleTaxonomy
.
A Taxonomy is an aggregation of Descriptions of Taxa and Character objects
SimpleTaxonomy()
- Constructor for class org.wwbota.identification.
SimpleTaxonomy
Species
- class org.wwbota.identification.
Species
.
Species(String)
- Constructor for class org.wwbota.identification.
Species
StandardDescription
- class org.wwbota.identification.
StandardDescription
.
This is a generic implementation, since it gets the information by iterating on all criteria, and calling the isCompatibleWith() function on each.
StandardDescription(Taxon)
- Constructor for class org.wwbota.identification.
StandardDescription
StateNotAllowedException
- exception org.wwbota.identification.
StateNotAllowedException
.
StateNotAllowedException()
- Constructor for class org.wwbota.identification.
StateNotAllowedException
T
Taxon
- interface org.wwbota.identification.
Taxon
.
A Taxon is a class in a classification.
Taxonomy
- interface org.wwbota.identification.
Taxonomy
.
A Taxonomy is an aggregation of Descriptions of Taxa and Character objects
threshold
- Variable in class org.wwbota.identification.
SimpleIdentification
toString()
- Method in class org.wwbota.identification.
EnumerationCharacter
toString()
- Method in class org.wwbota.identification.
Genus
toString()
- Method in class org.wwbota.identification.
RealNumberCharacter
toString()
- Method in class org.wwbota.identification.
SimpleIdentification
toString()
- Method in class org.wwbota.identification.
SimpleTaxonomy
toString()
- Method in class org.wwbota.identification.
Species
toString()
- Method in class org.wwbota.identification.
StandardDescription
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